- a -

• approx() : Test_Rational

- b -

• boundary_meson_2ptFunction() : Test_SF_fAfP

- c -

• calculate_hadron_correlator_eo_withFileIO() : Test_Spectrum
• calculate_hadron_correlator_withFileIO() : Test_Spectrum
• calculate_hadron_correlator_withFileIO_initial_guess() : Test_Spectrum
• calculate_quark_propagator_eo_withFileIO() : Test_Spectrum
• calculate_quark_propagator_withFileIO() : Test_Spectrum
• calculate_quark_propagator_withFileIO_initial_guess() : Test_Spectrum
• check_conf() : Test_IO_GaugeConfig
• check_sign() : Test_Spectrum_Overlap
• clover_lex() : Test_Spectrum_CRSMatrix
• CRSsolver() : Test_Spectrum_CRSMatrix

- d -

• dag() : SU_N
• determinant() : Test_HotStart
• domainwall() : Test_Spectrum_CRSMatrix

- e -

• eigenvalue() : Test_HotStart
• energy_density() : Test_Gauge

- g -

• gaussian() : Test_RandomNumbers_Mseries
• generate_filename() : FileUtils

- h -

• hadron_2ptFunction() : Test_Spectrum , Test_Spectrum_Domainwall , Test_Spectrum_Overlap , Test_Spectrum_Wilson
• hadron_2ptFunction_5d_solver() : Test_Spectrum_Overlap
• hadron_2ptFunction_Clover() : Test_Spectrum
• hadron_2ptFunction_CloverGeneral() : Test_Spectrum
• hadron_2ptFunction_eo() : Test_Spectrum
• hadron_2ptFunction_eo_Clover() : Test_Spectrum
• hadron_2ptFunction_eo_wallSource() : Test_Spectrum_Staggered
• hadron_2ptFunction_eo_Wilson() : Test_Spectrum
• hadron_2ptFunction_eo_withFileIO() : Test_Spectrum
• hadron_2ptFunction_eo_withFileIO_Clover() : Test_Spectrum
• hadron_2ptFunction_eo_withFileIO_Wilson() : Test_Spectrum
• hadron_2ptFunction_TMWilson() : Test_Spectrum
• hadron_2ptFunction_Wilson_ShiftOrigin() : Test_Spectrum
• hadron_2ptFunction_Wilson_WallSource() : Test_Spectrum
• hadron_2ptFunction_WilsonGeneral() : Test_Spectrum
• hadron_2ptFunction_withFileIO() : Test_Spectrum
• hadron_2ptFunction_withFileIO_Clover() : Test_Spectrum
• hadron_2ptFunction_withFileIO_Clover_initial_guess() : Test_Spectrum
• hadron_2ptFunction_withFileIO_CloverGeneral() : Test_Spectrum
• hadron_2ptFunction_withFileIO_initial_guess() : Test_Spectrum
• hadron_2ptFunction_withFileIO_TMWilson() : Test_Spectrum
• hadron_2ptFunction_withFileIO_Wilson() : Test_Spectrum
• hadron_2ptFunction_withFileIO_WilsonGeneral() : Test_Spectrum
• hadron_4ptFunction() : Test_Spectrum
• hadron_4ptFunction_Clover() : Test_Spectrum

- i -

• ImTr() : SU_N
• inverse() : Test_Rational
• is_equal() : Test_IO_GaugeConfig
• is_satisfied() : ParameterCheck
• Ix() : SU_N

- l -

• leapfrog_Nf0() : Test_HMC_Quenched
• leapfrog_Nf2() : Test_HMC_Overlap , Test_HMC_Wilson

- m -

• mat_exp() : SU_N
• mult() : Test_Mult , Test_Mult_Domainwall , Test_Mult_eo , Test_Mult_Overlap , Test_Mult_Wilson
• mult_Clover() : Test_Mult
• mult_Clover_eo() : Test_Mult_eo
• mult_Clover_Isochemical() : Test_Mult
• mult_CloverGeneral() : Test_Mult
• mult_TMWilson() : Test_Mult
• mult_Wilson_eo() : Test_Mult_eo
• mult_Wilson_Isochemical() : Test_Mult
• mult_WilsonGeneral() : Test_Mult

- n -

• non_negative() : ParameterCheck
• non_NULL() : ParameterCheck
• non_zero() : ParameterCheck

- o -

• operator!=() : yy
• operator*() : SU_N
• operator+() : SU_N , yy
• operator+=() : yy
• operator-() : SU_N , yy
• operator-=() : yy
• operator/() : SU_N
• operator<<() : yy
• operator==() : yy
• overlap_5d() : Test_Spectrum_CRSMatrix

- p -

• plaquette() : Test_Gauge
• plaquette_eo() : Test_Gauge
• plaquette_lex() : Test_Gauge
• polyakovloop() : Test_PolyakovLoop

- q -

• quark_num_suscept() : Test_QuarkNumSuscept

- r -

• rand_field() : Test_RandomNumbers
• rand_field_Mseries_Gaussian() : Test_RandomNumbers
• rand_field_Mseries_U1() : Test_RandomNumbers
• rand_field_Mseries_Z2() : Test_RandomNumbers
• rand_field_MT19937_Gaussian() : Test_RandomNumbers
• rand_field_MT19937_U1() : Test_RandomNumbers
• rand_field_MT19937_Z2() : Test_RandomNumbers
• read_text() : Test_Spectrum_CRSMatrix
• ReTr() : SU_N
• reunit() : SU_N
• RHMC_Nf2p1() : Test_HMC_Clover , Test_HMC_Clover_Isochemical , Test_HMC_Clover_SF
• RHMC_Nf2p1_eo() : Test_HMC_Clover
• run_test() : Test_HMC_Clover
• run_test_HYP() : Test_HMC_Clover
• run_test_RK1() : Test_GradientFlow , Test_GradientFlow_EnergyMomentumTensor_Gauge
• run_test_RK2() : Test_GradientFlow , Test_GradientFlow_EnergyMomentumTensor_Gauge
• run_test_RK3() : Test_GradientFlow , Test_GradientFlow_EnergyMomentumTensor_Gauge
• run_test_RK4() : Test_GradientFlow , Test_GradientFlow_EnergyMomentumTensor_Gauge
• run_test_RK_adaptive() : Test_GradientFlow , Test_GradientFlow_EnergyMomentumTensor_Gauge

- s -

• shift() : Test_Gauge
• smeared_rational() : Test_Rational
• solve() : Test_Eigensolver
• solve_chebyshev() : Test_Eigensolver_Chebyshev
• solve_SF() : Test_Eigensolver_Clover_SF
• solver() : Test_Solver_Wilson
• solver_BiCGStab_Cmplx() : Test_Solver_Wilson
• solver_BiCGStab_DS_L_Cmplx() : Test_Solver_Wilson
• solver_BiCGStab_IDS_L_Cmplx() : Test_Solver_Wilson
• solver_BiCGStab_L_Cmplx() : Test_Solver_Wilson
• solver_CGNE() : Test_Solver_Wilson
• solver_CGNR() : Test_Solver_Wilson
• solver_GMRES_m_Cmplx() : Test_Solver_Wilson
• solver_ShiftCG() : Test_Solver_Wilson
• square_non_zero() : ParameterCheck
• sum_global() : ThreadManager_OpenMP_Reduce

- t -

• test_global() : Test_RandomNumbers_Mseries , Test_RandomNumbers_MT19937
• test_io_data_text() : Test_IO_Data
• test_io_gconf_binary() : Test_IO_GaugeConfig
• test_io_gconf_binary_distributed() : Test_IO_GaugeConfig
• test_io_gconf_binary_parallel() : Test_IO_GaugeConfig
• test_io_gconf_fortran() : Test_IO_GaugeConfig
• test_io_gconf_ILDG() : Test_IO_GaugeConfig
• test_io_gconf_ILDG_parallel() : Test_IO_GaugeConfig
• test_io_gconf_main() : Test_IO_GaugeConfig
• test_io_gconf_text() : Test_IO_GaugeConfig
• topological_charge() : Test_TopologicalCharge

- u -

• uniform_calc_pi() : Test_RandomNumbers_Mseries , Test_RandomNumbers_MT19937
• unitary() : Test_HotStart
• update() : Test_GradientFlow , Test_GradientFlow_EnergyMomentumTensor_Fermion_1pt_Function , Test_GradientFlow_EnergyMomentumTensor_Fermion_2pt_Function
• update_Nf0() : Test_HMC_Quenched
• update_Nf2() : Test_HMC_Clover , Test_HMC_Clover_Isochemical , Test_HMC_Clover_SF , Test_HMC_Domainwall , Test_HMC_TMWilson , Test_HMC_Wilson
• update_Nf2_eo() : Test_HMC_Clover , Test_HMC_Staggered
• update_Nf2_PV() : Test_HMC_Domainwall
• update_Nf2_topology_fixing() : Test_HMC_Wilson

- v -

• verify() : Test

- w -

• wilsonloop() : Test_WilsonLoop
• write_text() : Test_Spectrum_CRSMatrix

- x -

• xI() : SU_N