File List

Here is a list of all files with brief descriptions:

[detail level 123456]

sample_hmc
sample_HMC.cpp
sample_spectrum
sample_Spectrum.cpp
src
lib
Action
Fermion
action_F_Ratio_eo.cpp
action_F_Ratio_eo.h
action_F_Ratio_lex.cpp
action_F_Ratio_lex.h
action_F_Rational.cpp
action_F_Rational.h
action_F_Rational_SF.cpp
action_F_Rational_SF.h
action_F_Standard_eo.cpp
action_F_Standard_eo.h
action_F_Standard_lex.cpp
action_F_Standard_lex.h
action_F_Standard_SF.cpp
action_F_Standard_SF.h
Gauge
action_G_Plaq.cpp
action_G_Plaq.h
action_G_Plaq_SF.cpp
action_G_Plaq_SF.h
action_G_Rectangle.cpp
action_G_Rectangle.h
action_G_Rectangle_SF.cpp
action_G_Rectangle_SF.h
action.cpp
action.h
Communicator
MPI
channel.cpp
channel.h
communicator.cpp
communicator_mpi.cpp
communicator_mpi.h
layout.cpp
layout.h
physical_map.cpp
Single
channel.cpp
channel.h
communicator_single.cpp
communicator.h
Eigen
eigensolver.h
eigensolver_IRLanczos.cpp
eigensolver_IRLanczos.h
Field
Imp
field_F_imp.cpp
field_F_imp_SU2-inc.h
field_F_imp_SU3-inc.h
field_F_imp_SU_N-inc.h
field_G_imp.cpp
field_G_imp_SU2-inc.h
field_G_imp_SU3-inc.h
field_G_imp_SU_N-inc.h
shiftField_lex_imp.cpp
Org
field_F.cpp
field_G.cpp
shiftField_lex.cpp
field.cpp
field.h
field_F.h
field_F_SF.h
field_G.h
field_G_SF.cpp
field_G_SF.h
index_eo.cpp
index_eo.h
index_lex.h
shiftField_eo.cpp
shiftField_eo.h
shiftField_lex.h
Fopr
Imp
fopr_CloverTerm_eo_impl.cpp
fopr_CloverTerm_eo_impl.h
fopr_CloverTerm_General_impl.cpp
fopr_CloverTerm_General_impl.h
fopr_CloverTerm_impl.cpp
fopr_CloverTerm_impl.h
fopr_Wilson_eo_impl.cpp
fopr_Wilson_eo_impl.h
fopr_Wilson_eo_impl_thread.cpp
fopr_Wilson_impl.cpp
fopr_Wilson_impl.h
fopr_Wilson_impl_SU2-inc.h
fopr_Wilson_impl_SU3-inc.h
fopr_Wilson_impl_SU_N-inc.h
fopr_Wilson_impl_thread.cpp
fopr_WilsonGeneral_impl.cpp
fopr_WilsonGeneral_impl.h
fopr_WilsonGeneral_impl_thread.cpp
Org
fopr_CloverTerm_eo_impl.cpp
fopr_CloverTerm_eo_impl.h
fopr_CloverTerm_General_impl.cpp
fopr_CloverTerm_General_impl.h
fopr_CloverTerm_impl.cpp
fopr_CloverTerm_impl.h
fopr_Wilson_eo_impl.cpp
fopr_Wilson_eo_impl.h
fopr_Wilson_impl.cpp
fopr_Wilson_impl.h
fopr_WilsonGeneral_impl.cpp
fopr_WilsonGeneral_impl.h
fopr.cpp
fopr.h
fopr_Chebyshev.cpp
fopr_Chebyshev.h
fopr_Clover.cpp
fopr_Clover.h
fopr_Clover_eo.cpp
fopr_Clover_eo.h
fopr_Clover_Isochemical.cpp
fopr_Clover_Isochemical.h
fopr_Clover_SF.cpp
fopr_Clover_SF.h
fopr_CloverGeneral.cpp
fopr_CloverGeneral.h
fopr_CloverTerm.h
fopr_CloverTerm_eo.h
fopr_CloverTerm_General.h
fopr_CRS.cpp
fopr_CRS.h
fopr_eo.h
fopr_Rational.cpp
fopr_Rational.h
fopr_Rational_SF.cpp
fopr_Rational_SF.h
fopr_Smeared.cpp
fopr_Smeared.h
fopr_Smeared_eo.cpp
fopr_Smeared_eo.h
fopr_Wilson.cpp
fopr_Wilson.h
fopr_Wilson_eo.cpp
fopr_Wilson_eo.h
fopr_Wilson_Isochemical.cpp
fopr_Wilson_Isochemical.h
fopr_Wilson_SF.cpp
fopr_Wilson_SF.h
fopr_WilsonGeneral.cpp
fopr_WilsonGeneral.h
Force
Fermion
Imp
tensorProd.cpp
Org
tensorProd.cpp
force_F.cpp
force_F.h
force_F_Clover_Nf2.cpp
force_F_Clover_Nf2.h
force_F_Clover_Nf2_Isochemical.cpp
force_F_Clover_Nf2_Isochemical.h
force_F_Clover_SF.cpp
force_F_Clover_SF.h
force_F_CloverTerm.cpp
force_F_CloverTerm.h
force_F_Rational.cpp
force_F_Rational.h
force_F_Smeared.cpp
force_F_Smeared.h
force_F_Wilson_eo.cpp
force_F_Wilson_eo.h
force_F_Wilson_Nf2.cpp
force_F_Wilson_Nf2.h
force_F_Wilson_Nf2_Isochemical.cpp
force_F_Wilson_Nf2_Isochemical.h
force_F_Wilson_SF.cpp
force_F_Wilson_SF.h
forceSmear.cpp
forceSmear.h
forceSmear_APE.cpp
forceSmear_APE.h
forceSmear_APE_SF.cpp
forceSmear_APE_SF.h
forceSmear_HYP.cpp
forceSmear_HYP.h
forceSmear_HYP_SF.cpp
forceSmear_HYP_SF.h
tensorProd.h
Gauge
force_G.cpp
force_G.h
force_G_Plaq.cpp
force_G_Plaq.h
force_G_Plaq_SF.cpp
force_G_Plaq_SF.h
force_G_Rectangle.cpp
force_G_Rectangle.h
force_G_Rectangle_SF.cpp
force_G_Rectangle_SF.h
HMC
action_list.cpp
action_list.h
builder_Integrator.cpp
builder_Integrator.h
hmc_General.cpp
hmc_General.h
hmc_Leapfrog.cpp
hmc_Leapfrog.h
integrator.h
integrator_Leapfrog.cpp
integrator_Leapfrog.h
integrator_Omelyan.cpp
integrator_Omelyan.h
integrator_UpdateP.cpp
integrator_UpdateP.h
integrator_UpdateU.cpp
integrator_UpdateU.h
langevin_Momentum.cpp
langevin_Momentum.h
IO
bridgeIO.cpp
bridgeIO.h
dataIO.h
dataIO_Text.h
dataIO_Text_impl.h
fieldIO.cpp
fieldIO.h
fieldIO_Binary.cpp
fieldIO_Binary.h
fieldIO_Binary_Distributed.cpp
fieldIO_Binary_Distributed.h
fieldIO_Binary_Parallel.cpp
fieldIO_Binary_Parallel.h
fieldIO_Fortran.cpp
fieldIO_Fortran.h
fieldIO_LIME.cpp
fieldIO_LIME.h
fieldIO_LIME_Parallel.cpp
fieldIO_LIME_Parallel.h
fieldIO_None.cpp
fieldIO_None.h
fieldIO_Text.cpp
fieldIO_Text.h
fieldIO_Text_4x4x4x8.cpp
fieldIO_Text_4x4x4x8.h
gaugeConfig.cpp
gaugeConfig.h
gaugeConfig_SF.cpp
gaugeConfig_SF.h
io_format.cpp
io_format.h
io_format_gauge.h
Measurements
Fermion
Imp
contract_4spinor.cpp
Org
contract_4spinor.cpp
contract_4spinor.h
corr2pt_4spinor.cpp
corr2pt_4spinor.h
corr2pt_Wilson_SF.cpp
corr2pt_Wilson_SF.h
corr4pt_4spinor.cpp
corr4pt_4spinor.h
fprop.h
fprop_Standard_eo.cpp
fprop_Standard_eo.h
fprop_Standard_lex.cpp
fprop_Standard_lex.h
fprop_Wilson_Shift.cpp
fprop_Wilson_Shift.h
noiseVector.h
noiseVector_Z2.cpp
noiseVector_Z2.h
quarkNumberSusceptibility_Wilson.cpp
quarkNumberSusceptibility_Wilson.h
source.cpp
source.h
source_Exponential.cpp
source_Exponential.h
source_Local.cpp
source_Local.h
source_MomentumWall.cpp	Momentum wall source
source_MomentumWall.h	Momentum wall source
source_Random.cpp
source_Random.h
source_Wall.cpp
source_Wall.h
source_Wall_SF.cpp
source_Wall_SF.h
Gauge
energyDensity.cpp
energyDensity.h
energyMomentumTensor.cpp
energyMomentumTensor.h
fieldStrength.cpp
fieldStrength.h
gaugeFixing.cpp
gaugeFixing.h
gaugeFixing_Coulomb.cpp
gaugeFixing_Coulomb.h
gaugeFixing_Landau.cpp
gaugeFixing_Landau.h
gaugeFixing_None.cpp
gaugeFixing_None.h
gradientFlow.cpp
gradientFlow.h
gradientFlow_AdaptiveRungeKutta.cpp
gradientFlow_AdaptiveRungeKutta.h
gradientFlow_RungeKutta.h
gradientFlow_RungeKutta_1st.cpp
gradientFlow_RungeKutta_1st.h
gradientFlow_RungeKutta_2nd.cpp
gradientFlow_RungeKutta_2nd.h
gradientFlow_RungeKutta_3rd.cpp
gradientFlow_RungeKutta_3rd.h
gradientFlow_RungeKutta_4th.cpp
gradientFlow_RungeKutta_4th.h
polyakovLoop.cpp
polyakovLoop.h
staple.cpp
staple.h
staple_eo.cpp
staple_eo.h
staple_lex.cpp
staple_lex.h
staple_SF.cpp
staple_SF.h
topologicalCharge.cpp
topologicalCharge.h
wilsonLoop.cpp
wilsonLoop.h
Parameters
commonParameters.cpp
commonParameters.h
parameterCheck.cpp
parameterCheck.h
parameterManager.cpp
parameterManager.h
parameterManager_XML.cpp
parameterManager_XML.h
parameterManager_YAML.cpp
parameterManager_YAML.h
parameters.cpp
parameters.h
ResourceManager
OpenMP
threadManager_OpenMP.cpp
OpenMP_stub
threadManager_OpenMP.cpp
threadManager_OpenMP.h
Smear
director_Smear.cpp
director_Smear.h
projection.cpp
projection.h
projection_Maximum_SU_N.cpp
projection_Maximum_SU_N.h
projection_Stout_SU3.cpp
projection_Stout_SU3.h
smear.cpp
smear.h
smear_APE.cpp
smear_APE.h
smear_APE_SF.cpp
smear_APE_SF.h
smear_APE_spatial.cpp
smear_APE_spatial.h
smear_HYP.cpp
smear_HYP.h
smear_HYP_SF.cpp
smear_HYP_SF.h
Solver
shiftsolver.h
shiftsolver_CG.cpp
shiftsolver_CG.h
solver.cpp
solver.h
solver_BiCGStab_Cmplx.cpp
solver_BiCGStab_Cmplx.h
solver_BiCGStab_DS_L_Cmplx.cpp
solver_BiCGStab_DS_L_Cmplx.h
solver_BiCGStab_IDS_L_Cmplx.cpp
solver_BiCGStab_IDS_L_Cmplx.h
solver_BiCGStab_L_Cmplx.cpp
solver_BiCGStab_L_Cmplx.h
solver_CG.cpp
solver_CG.h
solver_CGNE.cpp
solver_CGNE.h
solver_CGNR.cpp
solver_CGNR.h
solver_GMRES_m_Cmplx.cpp
solver_GMRES_m_Cmplx.h
Tools
decompose_Hessenberg_Cmplx.cpp
decompose_Hessenberg_Cmplx.h
decompose_LU_Cmplx.cpp
decompose_LU_Cmplx.h
decompose_LUP_Cmplx.cpp
decompose_LUP_Cmplx.h
decompose_QR_Cmplx.cpp
decompose_QR_Cmplx.h
director.h
eigen_QR_Cmplx.cpp
eigen_QR_Cmplx.h
epsilonTensor.cpp
epsilonTensor.h
evalexpr.cpp
evalexpr.h
evalexpr_global.h
evalexpr_parser.cpp
evalexpr_parser.h
evalexpr_symbol.cpp
evalexpr_symbol.h
factory.h
fft.cpp
fft.h
fft_3d.h
fft_3d_local.cpp
fft_3d_local.h
fft_3d_parallel1d.cpp
fft_3d_parallel1d.h
fft_3d_parallel3d.cpp
fft_3d_parallel3d.h
fft_xyz_1dim.cpp
fft_xyz_1dim.h
fft_xyz_3dim.cpp
fft_xyz_3dim.h
file_utils.cpp
file_utils.h
filename.cpp
filename.h
gammaMatrix.cpp
gammaMatrix.h
gammaMatrixSet.cpp
gammaMatrixSet.h
gammaMatrixSet_Chiral.cpp
gammaMatrixSet_Chiral.h
gammaMatrixSet_Dirac.cpp
gammaMatrixSet_Dirac.h
generatorSet_Mat_SU_N.cpp
generatorSet_Mat_SU_N.h
location.hh
mat_SU_N.cpp
mat_SU_N.h
math_Rational.cpp
math_Rational.h
position.hh
randomNumberManager.cpp
randomNumberManager.h
randomNumbers.cpp
randomNumbers.h
randomNumbers_Mseries.cpp
randomNumbers_Mseries.h
randomNumbers_MT19937.cpp
randomNumbers_MT19937.h
randomNumbers_SFMT.cpp
randomNumbers_SFMT.h
sorter.cpp
sorter.h
stack.hh
timer.cpp
timer.h
unique_pointer.h
vec_SU_N.h
bridge_init_factory.cpp
bridge_init_factory.h
bridge_setup.cpp
bridge_setup.h
bridge.h	Compilation of Bridge++ header files
bridge_complex.h
bridge_defs.h
bridge_long.h
configure.h
doxygen.h
tests
src
Eigensolver
test_Eigensolver.cpp
test_Eigensolver_Chebyshev.cpp
test_Eigensolver_Clover_SF.cpp
FFT
test_FFT.cpp
test_FFT_check.cpp
Gauge
test_Gauge_EnergyDensity.cpp
test_Gauge_Plaquette.cpp
test_Gauge_Shift.cpp
GradientFlow
test_GradientFlow_Nf0.cpp
HMC
test_HMC_Clover_Isochemical_Nf2.cpp
test_HMC_Clover_Isochemical_RHMC_Nf2p1.cpp
test_HMC_Clover_Nf2.cpp
test_HMC_Clover_Nf2_eo.cpp
test_HMC_Clover_RHMC_Nf2p1.cpp
test_HMC_Clover_RHMC_Nf2p1_eo.cpp
test_HMC_Clover_SF_Nf2.cpp	Testing the HMC leapfrog step with SF BC
test_HMC_Clover_SF_RHMC_Nf2p1.cpp	Testing the HMC leapfrog step with SF BC
test_HMC_Quenched.cpp
test_HMC_Quenched_Leapfrog.cpp
test_HMC_Wilson_Leapfrog_Nf2.cpp
test_HMC_Wilson_Nf2.cpp
HotStart
test_HotStart_Determinant.cpp
test_HotStart_Eigenvalue.cpp
test_HotStart_Unitary.cpp
IO
test_IO_Data_Text.cpp
test_IO_GaugeConfig.cpp
Mult
test_Mult.cpp
test_Mult_eo.cpp
test_Mult_Wilson.cpp
PolyakovLoop
test_PolyakovLoop.cpp
QuarkNumberSusceptibility
test_QuarkNumberSusceptibility_Clover_Isochemical.cpp
RandomNumbers
test_RandomNumbers_Field.cpp
test_RandomNumbers_Mseries_Gaussian.cpp
test_RandomNumbers_Mseries_Global.cpp
test_RandomNumbers_Mseries_Uniform.cpp
test_RandomNumbers_MT19937_Global.cpp
test_RandomNumbers_MT19937_Uniform.cpp
test_RandomNumbers_SFMT_Global.cpp
test_RandomNumbers_SFMT_Uniform.cpp
Rational
test_Rational_Approx.cpp
test_Rational_Inverse.cpp
test_Rational_Smeared.cpp
SF_fAfP
test_SF_fAfP_Boundary_Meson_2ptFunction.cpp
Solver
test_Solver_Wilson.cpp
test_Solver_Wilson_ShiftCG.cpp
Spectrum
test_Spectrum_2ptFunction.cpp
test_Spectrum_2ptFunction_eo.cpp
test_Spectrum_2ptFunction_eo_withFileIO.cpp
test_Spectrum_2ptFunction_withFileIO.cpp
test_Spectrum_2ptFunction_withFileIO_initial_guess.cpp
test_Spectrum_4ptFunction.cpp
test_Spectrum_CRSMatrix_Clover_Lexical.cpp
test_Spectrum_CRSMatrix_CRSsolver.cpp
test_Spectrum_Wilson_2ptFunction.cpp
TopologicalCharge
test_TopologicalCharge.cpp
WilsonLoop
test_WilsonLoop.cpp
main.cpp
run_test.cpp
run_testmanager.cpp
run_testmanager.h
test.cpp
test.h
testlist.h
testManager.cpp
testManager.h