66 namespace Test_HMC_Clover_Isochemical {
 
   67   const std::string 
test_name = 
"HMC.Clover_Isochemical.RHMC_Nf2p1";
 
   71     const std::string filename_input  = 
"test_HMC_Clover_Isochemical_RHMC_Nf2p1.yaml";
 
   72     const std::string filename_output = 
"stdout";
 
   74     class Parameters_Test_HMC_Clover_Isochemical : 
public Parameters {
 
   76       Parameters_Test_HMC_Clover_Isochemical()
 
   78         Register_string(
"gauge_config_status", 
"NULL");
 
   80         Register_string(
"gauge_config_type_input", 
"NULL");
 
   81         Register_string(
"config_filename_input", 
"NULL");
 
   83         Register_string(
"gauge_config_type_output", 
"NULL");
 
   84         Register_string(
"config_filename_output", 
"NULL");
 
   86         Register_int(
"trajectory_number", 0);
 
   87         Register_int(
"trajectory_number_step", 0);
 
   88         Register_int(
"save_config_interval", 0);
 
   90         Register_int(
"seed_for_noise", 0);
 
   91         Register_int(
"number_of_noises", 0);
 
   93         Register_string(
"verbose_level", 
"NULL");
 
   95         Register_double(
"expected_result", 0.0);
 
  103 #ifdef USE_TESTMANAGER_AUTOREGISTER 
  105 #if defined(USE_GROUP_SU2) 
  124     Parameters *params_test        = 
new Parameters_Test_HMC_Clover_Isochemical;
 
  156     params_manager.
read_params(filename_input, params_all);
 
  158     const string str_gconf_status = params_test->
get_string(
"gauge_config_status");
 
  159     const string str_gconf_read   = params_test->
get_string(
"gauge_config_type_input");
 
  160     const string readfile         = params_test->
get_string(
"config_filename_input");
 
  161     const string str_gconf_write  = params_test->
get_string(
"gauge_config_type_output");
 
  162     const string writefile        = params_test->
get_string(
"config_filename_output");
 
  163     int          iconf            = params_test->
get_int(
"trajectory_number");
 
  164     const int    Ntraj            = params_test->
get_int(
"trajectory_number_step");
 
  165     const int    i_save_conf      = params_test->
get_int(
"save_config_interval");
 
  166     int          i_seed_noise     = params_test->
get_int(
"seed_for_noise");
 
  167     const string str_vlevel       = params_test->
get_string(
"verbose_level");
 
  169     const bool   do_check        = params_test->
is_set(
"expected_result");
 
  170     const double expected_result = do_check ? params_test->
get_double(
"expected_result") : 0.0;
 
  172     const string str_gmset_type     = params_clover->
get_string(
"gamma_matrix_type");
 
  173     const string str_proj_type      = params_proj->
get_string(
"projection_type");
 
  174     const string str_smear_type     = params_smear->
get_string(
"smear_type");
 
  175     const string str_solver_MD_type = params_solver_MD->
get_string(
"solver_type");
 
  176     const string str_solver_H_type  = params_solver_H->
get_string(
"solver_type");
 
  181     vout.
general(vl, 
"  gconf_status   = %s\n", str_gconf_status.c_str());
 
  182     vout.
general(vl, 
"  gconf_read     = %s\n", str_gconf_read.c_str());
 
  183     vout.
general(vl, 
"  readfile       = %s\n", readfile.c_str());
 
  184     vout.
general(vl, 
"  gconf_write    = %s\n", str_gconf_write.c_str());
 
  185     vout.
general(vl, 
"  writefile      = %s\n", writefile.c_str());
 
  188     vout.
general(vl, 
"  i_save_conf    = %d\n", i_save_conf);
 
  189     vout.
general(vl, 
"  vlevel         = %s\n", str_vlevel.c_str());
 
  190     vout.
general(vl, 
"  gmset_type     = %s\n", str_gmset_type.c_str());
 
  191     vout.
general(vl, 
"  proj_type      = %s\n", str_proj_type.c_str());
 
  192     vout.
general(vl, 
"  smear_type     = %s\n", str_smear_type.c_str());
 
  193     vout.
general(vl, 
"  solver_MD_type = %s\n", str_solver_MD_type.c_str());
 
  194     vout.
general(vl, 
"  solver_H_type  = %s\n", str_solver_H_type.c_str());
 
  214     if (str_gconf_status == 
"Continue") {
 
  216     } 
else if (str_gconf_status == 
"Cold_start") {
 
  218     } 
else if (str_gconf_status == 
"Hot_start") {
 
  222       vout.
crucial(vl, 
"%s: unsupported gconf status \"%s\".\n", 
test_name.c_str(), str_gconf_status.c_str());
 
  243     Projection *proj  = Projection::New(str_proj_type);
 
  244     Smear      *smear = Smear::New(str_smear_type, proj);
 
  247     ForceSmear *force_smear = ForceSmear::New(str_smear_type, proj);
 
  262     Solver *solver_MD = Solver::New(str_solver_MD_type, fopr_smear);
 
  266     Solver *solver_H = Solver::New(str_solver_H_type, fopr_smear);
 
  270     Solver *solver_MD_prec = Solver::New(str_solver_MD_type, fopr_smear_prec);
 
  274     Solver *solver_H_prec = Solver::New(str_solver_H_type, fopr_smear_prec);
 
  281                                   fprop_MD_prec, fprop_H_prec);
 
  285                                (
Fopr *)fopr_smear, (
Force *)force_fopr_smear,
 
  315     valarray<Action *> actions(4);
 
  316     actions[0] = (
Action *)action_F_Nf2_d;
 
  317     actions[1] = (
Action *)action_F_Nf2_prec;
 
  318     actions[2] = (
Action *)action_F_Nf1;
 
  319     actions[3] = (
Action *)action_G;
 
  321     valarray<Director *> directors(1);
 
  322     directors[0] = (
Director *)dr_smear;
 
  333     HMC_General hmc(actions, directors, integrator, rand);
 
  351     vout.
general(vl, 
"HMC start: Ntraj = %d\n", Ntraj);
 
  354     vout.
general(vl, 
"Polyakov loop = %e %e\n", real(ploop0), imag(ploop0));
 
  357     double result_quark_suscept0 = quark_suscept->
measure();
 
  360     for (
int traj = 0; traj < Ntraj; ++traj) {
 
  362       vout.
general(vl, 
"---------------------------------------------------\n");
 
  367       if ((iconf + traj + 1) % i_save_conf == 0) {
 
  372       vout.
general(vl, 
"Polyakov loop = %e %e\n", real(ploop1), imag(ploop1));
 
  375       double result_quark_suscept1 = quark_suscept->
measure();
 
  383     delete params_action_G;
 
  384     delete params_clover;
 
  385     delete params_clover_prec;
 
  386     delete params_clover1;
 
  389     delete params_dr_smear;
 
  390     delete params_rational_MD;
 
  391     delete params_rational_H;
 
  392     delete params_solver_MD;
 
  393     delete params_solver_H;
 
  394     delete params_integrator;
 
  409     delete force_fopr_c_prec;
 
  416     delete force_fopr_smear;
 
  417     delete       fopr_smear_prec;
 
  418     delete force_fopr_smear_prec;
 
  424     delete solver_MD_prec;
 
  425     delete fprop_MD_prec;
 
  426     delete solver_H_prec;
 
  429     delete action_F_Nf2_prec;
 
  430     delete action_F_Nf2_d;
 
  433     delete force_fopr_c1;
 
  438     delete force_fopr_r2;
 
  439     delete force_fopr_MD;
 
  449     delete quark_suscept;
 
  455       vout.
detailed(vl, 
"check skipped: expected_result not set.\n\n");
 
Random number generator base on M-series. 
 
Fermion operator for rational approximation. 
 
void read_params(const std::string ¶ms_file, Parameters *params)
read parameters from file. 
 
void detailed(const char *format,...)
 
void set_parameters(const Parameters ¶ms)
Setting parameters of clover fermion force. 
 
void set_parameters(const Parameters ¶ms)
 
void general(const char *format,...)
 
Container of Field-type object. 
 
virtual void set_parameters(const Parameters &)=0
 
Base class of fermion force calculation. 
 
int get_int(const string &key) const 
 
static Parameters * New(const std::string &realm)
 
void set_random(RandomNumbers *rand)
 
Base class of HMC action class family. 
 
Base class of Integrator class family. 
 
virtual void set_parameters(const Parameters ¶ms)=0
 
smeared fermion operator. 
 
Base class for force calculation of smeared operators. 
 
static bool RegisterTest(const std::string &key, const Test_function func)
 
void set_parameters(const Parameters ¶ms)
 
Manager of commonly used data object in HMC. 
 
bool is_set(const string &) const 
 
double get_double(const string &key) const 
 
Quark number susceptibility for the Wilson-type fermion. 
 
void set_parameters(const Parameters ¶ms)
 
void set_parameters(const Parameters ¶ms)
 
double measure()
measure tr1 = Tr[D1*Sq], tr2 = Tr[D2*Sq], tr3 = Tr[D1*Sq*D1*Sq]. 
 
int non_NULL(const std::string v)
 
Get quark propagator for Fopr with lexical site index. 
 
void crucial(const char *format,...)
 
void Register_Parameters(const string &, Parameters *const)
 
base class for projection operator into gauge group. 
 
void write_file(Field *u, const string &filename)
 
Manager of smeared configurations. 
 
Base class for noise vector generator. 
 
Base class for linear solver class family. 
 
Base class of random number generators. 
 
void set_parameters(const Parameters ¶ms)
 
void set_parameters(const Parameters ¶ms)
 
Force calculation for smeared fermion operators. 
 
void set_parameters(const Parameters ¶ms)
set paramters, must be called before set_config 
 
int non_negative(const int v)
 
base class for smearing of link variables. 
 
dcomplex measure_ploop(Field_G &U)
Polyakov loop measurement. 
 
Parameter manager with YAML parser. 
 
HMC action for Hasenbusch preconditioned fermions. 
 
GaugeConfig class for file I/O of gauge configuration. 
 
Base class of fermion operator family. 
 
int verify(const double expected, const double result)
 
void read_file(Field *u, const string &filename)
 
Z2 Noise vector for trance calculation. 
 
void set_parameters(const Parameters ¶ms)
 
string get_string(const string &key) const 
 
void report(const Bridge::VerboseLevel vl=Bridge::GENERAL)
 
virtual void set_parameters(const Parameters &)=0
 
Standard fermion action for HMC. 
 
void set_config(Field *U)
set pointer to original thin link variable 
 
static VerboseLevel set_verbose_level(const std::string &str)
 
const std::string test_name